[Beowulf] MPI, fault handling, etc.

Justin Y. Shi shi at temple.edu
Thu Mar 10 05:54:02 PST 2016

I will supper C's "hater" listing effort just to keep a spot light on the
important subject.

The question is not MPI is efficient or not. Fundamentally, all electronics
will fail in unexpected ways. Bare metal computing was important decades
ago but detrimental to large scale computing. It is simply flawed for
extreme scale computing.

The Alan Fekete, Nancy Lynch, John Spinneli's impossible proof is the
fundamental "line in the sand" that cannot be crossed.

The corollary of that proof is that it is impossible to detect failure
reliably either. Therefore, those efforts for for runtime
detection/repair/reschedule are also flawed for extreme scale computing.


On Thu, Mar 10, 2016 at 8:44 AM, Lux, Jim (337C) <james.p.lux at jpl.nasa.gov>

> This is interesting stuff.
> Think back a few years when we were talking about checkpoint/restart
> issues: as the scale of your problem gets bigger, the time to checkpoint
> becomes bigger than the time actually doing useful work.
> And, of course, the reason we do checkpoint/restart is because it’s
> bare-metal and easy.  Just like simple message passing is “close to the
> metal” and “straightforward”.
> Similarly, there’s “fine grained” error detection and correction: ECC
> codes in memory; redundant comm links or retries.  Each of them imposes
> some speed/performance penalty (it takes some non-zero time to compute the
> syndrome bits in a ECC, and some non-zero time to fix the errored bits… in
> a lot of systems these days, that might be buried in a pipeline, but the
> delay is there, and affects performance)
> I think of ECC as a sort of diffuse fault management: it’s pervasive,
> uniform, and the performance penalty is applied evenly through the system.
> Redundant (in the TMR sense) links are the same way.
> Retries are a bit different.  The “detecting” a fault is diffuse and
> pervasive (e.g. CRC checks occur on each message), but the correction of
> the fault is discrete and consumes resources at that time.  In a system
> with tight time coupling (a  pipelined systolic array would be the sort of
> worst case), many nodes have to wait to fix the one that failed.
> A lot depends on the application: tighter time coupling is worse than
> embarrassingly parallel (which is what a lot of the “big data” stuff is:
> fundamentally EP, scatter the requests, run in parallel, gather the
> results).
> The challenge is doing stuff in between:  You may have a flock with excess
> capacity (just as ECC memory might have 1.5N physical storage bits to be
> used to store N bits), but how do you automatically distribute the
> resources to be failure tolerant.   The original post in the thread points
> out that MPI is not a particularly facile tool for doing this.  But I’m not
> sure that there is a tool, and I’m not sure that MPI is the root of the
> lack of tools.    I think it’s that moving from close to the metal is a
> “hard problem” to do in a generic way.  (The issues about 32 bit counts are
> valid, though)
> James Lux, P.E.
> Task Manager, DHFR Space Testbed
> Jet Propulsion Laboratory
> 4800 Oak Grove Drive, MS 161-213
> Pasadena CA 91109
> +1(818)354-2075
> +1(818)395-2714 (cell)
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