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Would love to help you guys out in anyway i can in terms of hardware processing. <br>
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Have you guys thought of doing something like SETI@home and those projects to get idle compute power to help churn through the massive amounts of data?</div>
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Regards,<br>
Jonathan<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Tim Cutts <tjrc@sanger.ac.uk><br>
<b>Sent:</b> 04 February 2021 11:26<br>
<b>To:</b> Jonathan Aquilina <jaquilina@eagleeyet.net><br>
<b>Cc:</b> Beowulf <beowulf@beowulf.org><br>
<b>Subject:</b> Re: [Beowulf] Project Heron at the Sanger Institute [EXT]</font>
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<div class="">On 4 Feb 2021, at 10:14, Jonathan Aquilina via Beowulf <<a href="mailto:beowulf@beowulf.org" class="">beowulf@beowulf.org</a>> wrote:</div>
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I am curious though to chunk out such large data is something like hadoop/HBase and the like of those platforms, are those whats being used?</div>
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<div class="">It’s a combination of our home-grown sequencing pipeline which we use across the board, and then a specific COG-UK analysis of the genomes themselves. This pipeline is common to all consortium members who are contributing sequence data. It’s
a Nextflow pipeline, and the code is here:</div>
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<div class=""><a href="https://github.com/connor-lab/ncov2019-artic-nf" class="">https://github.com/connor-lab/ncov2019-artic-nf</a></div>
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<div class="">Being nextflow, you can run it on anything for which nextflow has a backend scheduler. It supports data from both Illumina and Oxford Nanopore sequencers.</div>
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<div class="">Tim</div>
-- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
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