[Beowulf] in pbs submit script, setenv command is not working
rigved.sharma123 at gmail.com
Mon Apr 12 08:19:26 PDT 2010
thanksa lot its working
On Fri, Apr 9, 2010 at 12:14 AM, Don Holmgren <djholm at fnal.gov> wrote:
> You should add, as the second line,
> #PBS -S /bin/csh
> else PBS will (I think) use your default login shell, which I assume is
> not csh (explaining the "setenv" error message).
> Also, you have a typo. You should have
> echo "NPROCS is $NPROCS"
> instead of
> echo "NPOCS is $NPOCS"
> Don Holmgren
> On Wed, 7 Apr 2010, akshar bhosale wrote:
>> we have cluser of 8 nodes and it is rhel 5.2 (64 bit). We have torque and
>> here is my submit script which is
>> #!/bin/csh -f
>> #PBS -l nodes=2:ppn=2
>> #PBS -r n
>> #PBS -A ourproj
>> #PBS -V
>> #PBS -o output_pvd3.6.txt
>> #PBS -e error_pvd3.6.txt
>> echo PBS JOB id is $PBS_JOBID
>> echo PBS_NODEFILE is $PBS_NODEFILE
>> echo PBS_QUEUE is $PBS_QUEUE
>> setenv NPROCS `cat $PBS_NODEFILE|wc -l`
>> echo "NPOCS is $NPOCS"
>> #/opt/intel/mpi/bin64/mpirun --totalnum=$NPROCS --file=$PBS_NODEFILE
>> --rsh=/usr/bin/ssh -1 --ordered --verbose -l -machinefile $PBS_NODEFILE
>> -np $NPROCS /home/aksharb/helloworld
>> #sleep 100
>> cat $PBS_NODEFILE
>> in output file i get
>> PBS JOB id is 1725.server1.gnps.tkl
>> PBS_NODEFILE is /opt/PBS/aux//1725.server1.gnps.tkl
>> PBS_QUEUE is batch
>> NPOCS is
>> and error file says :
>> /opt/PBS/mom_priv/jobs/1725.server1.gnps.tkl.SC: line 11: setenv: command
>> not found
>> kindly guide me.
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