gromacs benchmark and quad Xeons
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Velocet math at velocet.caTue Jun 18 15:06:44 PDT 2002
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On Tue, Jun 18, 2002 at 04:28:04PM -0500, Richard Walsh's all... > On Tue, Jun 18, 2002 at 02:14:02PM -0400, Velocet wrote: > ... > > Are the original rpms for gromacs which are generally compiled for P2/MMX > > going to be absolutely the worst possible situation for a Xeon? Or should > > they work relatively near best-speed (minus missing SSE and SSE2 instructions, > > though I dont even know if GCC gives the full set of either for a hand > > compile). > > > > What's wrong here? Any ideas? > > My first reaction is to wonder what your memory foot print is ... > the bandwidth of all quad's I have seen (except the ES-45 with > Compaq's typhoon chipset and cross-bar) has been lousy. If you > are not running mostly/completely in cache this could be an > issue. Competition from all four CPUs for bandwidth could kill > performance. but with DDR ram on a dual Tyan 2460/66 board I saw like 2.4x or some odd speedup with 2 cpus over 1. (superlinear speedup) - as I mentioned, possibly due to reduced cache thrashing. > Have your tried running on one CPU? Can you shrink the test > case to make sure it is cache and then look at the performance? > How does stream performanc on this quad? Whats a good test? I'll try out one CPU and see what happens. Too bad the thing is slated for production later this week - wont be able to put nasty calculation stuff on it anymore... :( Not many quad xeons lying around just waiting for a thrashing :) Anyone got one handy? :) I'd love to see some 8-way stuff too. Takers? /kc > > > rbw > #--------------------------------------------------- > # Richard Walsh > # Project Manager, Cluster Computing, Computational > # Chemistry and Finance > # netASPx, Inc. > # 1200 Washington Ave. So. > # Minneapolis, MN 55415 > # VOX: 612-337-3467 > # FAX: 612-337-3400 > # EMAIL: rbw at networkcs.com, richard.walsh at netaspx.com > # rbw at ahpcrc.org > # > #--------------------------------------------------- > # "What you can do, or dream you can, begin it; > # Boldness has genius, power, and magic in it." > # -Goethe > #--------------------------------------------------- > # "Without mystery, there can be no authority." > # -Charles DeGaulle > #--------------------------------------------------- > # "Why waste time learning when ignornace is > # instantaneous?" -Thomas Hobbes > #--------------------------------------------------- > # "In the chaos of a river thrashing, all that water > # still has to stand in line." -Dave Dobbyn > #--------------------------------------------------- > -- Ken Chase, math at velocet.ca * Velocet Communications Inc. * Toronto, CANADA
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